chr19:39745146:C>G Detail (hg19)
Information
Genome
| Assembly | Position |
|---|---|
| hg19 | chr19:39,745,146-39,745,146 |
| hg38 | chr19:39,254,506-39,254,506 View the variant detail on this assembly version. |
HGVS
[No Data.]
Summary
MGeND
| Clinical significance | |
| Variant entry | |
| GWAS entry | |
| Disease area statistics | Show details |
Frequency
| JP | HGVD:[No Data.] |
| ToMMo:0.233 | |
| NCBN:[No Data.] | |
| NCBN(Hondo):[No Data.] | |
| NCBN(Ryukyu):[No Data.] | |
| East asia | ExAC:[No Data.] |
Prediction
ClinVar
| Clinical Significance | |
| Review star | [No Data.] |
| Show details | |
Links
Disease area statistics
[No Data.]
MGeND
[No Data.]
ClinVar
[No Data.]
CIViC
[No Data.]
DisGeNET
| Score | Disease name | Description | Source | Pubmed | Links |
|---|---|---|---|---|---|
| <0.001 | hepatitis A | In HBeAg-positive patients (n = 48), HBV viral load correlated with active hepat... | BeFree | 23469142 | Detail |
| <0.001 | hepatitis | In HBeAg-positive patients (n = 48), HBV viral load correlated with active hepat... | BeFree | 23469142 | Detail |
| <0.001 | hepatitis C | Because the first three SNPs were in very strong linkage disequilibrium with one... | BeFree | 21254157 | Detail |
Annotation
Annotations
| Descrption | Source | Links |
|---|---|---|
| In HBeAg-positive patients (n = 48), HBV viral load correlated with active hepatitis, while in HBeAg... | DisGeNET | Detail |
| In HBeAg-positive patients (n = 48), HBV viral load correlated with active hepatitis, while in HBeAg... | DisGeNET | Detail |
| Because the first three SNPs were in very strong linkage disequilibrium with one another (r2 = 0.94-... | DisGeNET | Detail |
- Gene
- -
- dbSNP
- rs10853728 dbSNP
- Genome
- hg19
- Position
- chr19:39,745,146-39,745,146
- Variant Type
- snv
- Reference Allele
- C
- Alternative Allele
- G
- ToMMo VCF FILTER column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- PASS
- Total VCF ID column value (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- rs10853728
- Allele frequency, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 0.2327
- Allele count in genotypes, for each ALT allele (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 3900
- Total number of alleles in called genotypes (ToMMo 8.3KJPN Allele Frequency Panel(v20200831))
- 16760
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